{"id":15,"date":"2011-02-17T15:30:18","date_gmt":"2011-02-17T15:30:18","guid":{"rendered":"http:\/\/research.chemistry.ohio-state.edu\/jackman\/"},"modified":"2024-01-30T15:25:27","modified_gmt":"2024-01-30T20:25:27","slug":"publications-2","status":"publish","type":"page","link":"https:\/\/research.cbc.osu.edu\/jackman.14\/publications-2\/","title":{"rendered":"PUBLICATIONS"},"content":{"rendered":"\n

Search for Jackman Lab papers on PubMed<\/strong><\/a><\/h4>\n\n\n\n
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2024 <\/strong><\/span><\/h2>\n<\/div>\n
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Bowles IE, Jackman JE.  A tRNA-specific function for tRNA methyltransferase Trm10 is associated with a new tRNA quality control mechanism in Saccharomyces cerevisiae.<\/strong> <\/span>RNA. 2024. PubMed<\/a><\/span><\/p>\n<\/div>\n<\/div>\n

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2023 <\/strong><\/span><\/h2>\n<\/div>\n
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Bowles IE, Jackman JE.  Diversity in Biological Function and Mechanism of the tRNA Methyltransferase Trm10.<\/strong> <\/span>Accounts of Chemical Research. 2023. PubMed<\/a><\/span><\/p>\n

Strassler SE, Bowles IE, Krishnamohan A, Kim H, Edgington CB, Kuiper EG, Hancock CJ, Comstock LR, Jackman JE, Conn GL. tRNA m1G9 modification depends on substrate-specific RNA conformational changes induced by the methyltransferase Trm10.<\/strong> <\/span>Journal of Biological Chemistry. 2023. PubMed<\/a><\/span><\/p>\n<\/div>\n<\/div>\n

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2022 <\/strong><\/span><\/h2>\n<\/div>\n
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Strassler SE, Bowles IE, Dey D, Jackman JE, Conn GL. Tied up in knots: untangling substrate recognition by the SPOUT methyltransferases.<\/strong> <\/span>Journal of Biological Chemistry. 2022. PubMed<\/a><\/span><\/p>\n<\/div>\n<\/div>\n

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2021 <\/strong><\/span><\/h2>\n<\/div>\n
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Krishnamohan A, Dodbele S, Jackman JE. Transient kinetic analysis for studying ionizations in RNA modification enzyme mechanisms.<\/strong> <\/span>Methods in Enzymology. 2021. PubMed<\/a><\/span><\/p>\n

Jackman JE. RNA Modification Enzymes Preface.<\/strong> <\/span>RNA MODIFICATION ENZYMES. 2021. PubMed<\/a><\/span><\/p>\n

Patel KJ, Yourik P, Jackman JE. Fidelity of base-pair recognition by a 3\u2032\u20135\u2032 polymerase: mechanism of the Saccharomyces cerevisiae tRNAHis guanylyltransferase.<\/strong> <\/span>RNA. 2021. PubMed<\/a><\/span><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2020 <\/strong><\/span><\/h2>\n<\/div>\n
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Snyder KJ, Zitzer NC, Gao Y, Choe HK, Sell NE, Neidemire-Colley L, Ignaci A, Kale C, Devine RD, Abad MG, Pietrzak M, Wang M, Lin H, Zhang YW, Behbehani GK, Jackman JE, Garzon R, Vaddi K, Baiocchi RA, Ranganathan P.  PRMT5 regulates T cell interferon response and is a target for acute graft-versus-host disease.<\/strong> <\/span>JCI Insight. 2020 Apr 23. PubMed<\/a><\/span><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2019 <\/strong><\/span><\/h2>\n<\/div>\n
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Howell NW, Jackman JE.  Impact of Chemical Modification on tRNA Function.<\/strong> <\/span>Wiley Online Library 2019 Nov 21. Wiley<\/a><\/span><\/p>\n

Howell NW, Jora M, Jepson BF, Limbach PA, Jackman JE.  Distinct substrate specificities of the human tRNA methyltransferases TRMT10A and TRMT10B.<\/strong> <\/span>RNA 2019 Jul 10. PubMed<\/a><\/span><\/p>\n

Matlock AO, Smith BA, Jackman JE. Chemical footprinting and kinetic assays reveal dual functions for highly conserved eukaryotic tRNAHis guanylyltransferase residues.<\/strong> <\/span>J Biol Chem. 2019 Apr 18. PubMed<\/a><\/span><\/span><\/p>\n

Chen AW, Jayasinghe MI, Chung CZ, Rao BS, Kenana R, Heinemann IU, Jackman JE. The Role of 3′ to 5′ Reverse RNA Polymerization in tRNA Fidelity and Repair.<\/strong> <\/span>Genes (Basel). 2019 Mar 26;10(3). PubMed<\/a><\/span><\/p>\n

Dodbele S, Moreland B, Gardner SM, Bundschuh R, Jackman JE. 5′-End sequencing in Saccharomyces cerevisiae offers new insights into 5′-ends of tRNAH is and snoRNAs.<\/strong> <\/span>FEBS Lett. 2019 Mar 25. PubMed<\/a><\/span><\/p>\n

P\u00f6hler MT, Roach TM, Betat H, Jackman JE, M\u00f6rl M.  A Temporal Order in 5′- and 3′- Processing of Eukaryotic tRNAHis. <\/strong><\/span>Int J Mol Sci. 2019 Mar 19;20(6).<\/span> <\/strong><\/span><\/span>PubMed<\/a><\/p>\n

Krishnamohan A, Dodbele S., Jackman JE. Insights into Catalytic and tRNA Recognition Mechanism of the Dual-Specific tRNA Methyltransferase from Thermococcus kodakarensis.<\/strong> <\/span>Genes (Basel)<\/span>. 2019 Jan 30;10(2). PubMed<\/a><\/span><\/span><\/p>\n

Krishnamohan A, Jackman JE.  A Family Divided: Distinct Structural and Mechanistic Features of the SpoU-TrmD (SPOUT) Methyltransferase Superfamily. <\/strong><\/span>Biochemistry.<\/span>  2019 Feb 5;58(5):336-345 <\/strong><\/span><\/span>PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2018 <\/strong><\/span><\/h2>\n<\/div>\n
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Dodbele S., Jackman J.E., Gray M.W. Mechanisms and Evolution of tRNA 5\u2032-Editing in Mitochondria.<\/strong><\/span> In: Cruz-Reyes J., Gray M. (eds) RNA Metabolism in Mitochondria. Nucleic Acids and Molecular Biology, 2018, vol 34. Springer, Cham <\/strong>Springer Link<\/a><\/span><\/span><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2017 <\/strong><\/span><\/h2>\n<\/div>\n
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Krishnamohan A, Jackman JE.  Mechanistic features of the atypical tRNA m1G9 SPOUT methyltransferase, Trm10. <\/strong><\/span>Nucleic Acids Res.<\/span> 2017 Sep 6;45(15):9019-9029. <\/strong><\/span><\/span>PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2016 <\/strong><\/span><\/h2>\n<\/div>\n
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Long Y, Abad MG, Olson ED, Carrillo EY, Jackman JE. Identification of distinct biological functions for four 3′-5′ RNA polymerases.<\/strong><\/span> Nucleic Acids Res. 2016 Aug 2. PubMed<\/a><\/p>\n

Edvardson S, Elbaz-Alon Y, Jalas C, Matlock A, Patel K, Labb\u00e9 K, Shaag A, Jackman JE, Elpeleg O. A mutation in the THG1L gene in a family with cerebellar ataxia and developmental delay.<\/strong> <\/span>Neurogenetics. 2016 Jun 15. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2015 <\/strong><\/span><\/h2>\n<\/div>\n
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Long Y, Jackman JE. In vitro substrate specificities of 3′-5′ polymerases correlate with biological outcomes of tRNA 5′-editing reactions.<\/strong><\/span> FEBS Lett. 2015 Jul 22;589(16):2124-30. PubMed<\/a><\/p>\n

Rao BS, Jackman JE. Life without post-transcriptional addition of G-1: two alternatives for tRNAHis identity in Eukarya.<\/strong><\/span> RNA. 2015 Feb;21(2):243-53. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2014 <\/strong><\/span><\/h2>\n<\/div>\n
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Gillis D, Krishnamohan A, Yaacov B, Shaag A, Jackman JE, Elpeleg O. TRMT10A dysfunction is associated with abnormalities in glucose homeostasis, short stature and microcephaly.<\/strong><\/span> J Med Genet. 2014 Sep;51(9):581-6. PubMed<\/a><\/p>\n

Abad MG, Long Y, Kinchen RD, Schindel ET, Gray MW, Jackman JE. Mitochondrial tRNA 5′-editing in Dictyostelium discoideum and Polysphondylium pallidum.<\/strong> <\/span>J Biol Chem. 2014 May 30;289(22):15155-65. PubMed<\/a><\/p>\n

Smith BA, Jackman JE. Saccharomyces cerevisiae Thg1 uses 5′-pyrophosphate removal to control addition of nucleotides to tRNA(His.).<\/strong><\/span> Biochemistry. 2014 Mar 4;53(8):1380-91. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2013 <\/strong><\/span><\/h2>\n<\/div>\n
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Swinehart WE, Henderson JC, Jackman JE. Unexpected expansion of tRNA substrate recognition by the yeast m1G9 methyltransferase Trm10.<\/strong><\/span> RNA. 2013 Aug;19(8):1137-46. PubMed<\/a><\/p>\n

Rao BS, Mohammad F, Gray MW, Jackman JE. Absence of a universal element for tRNAHis identity in Acanthamoeba castellanii.<\/strong> <\/span>Nucleic Acids Res. 2013 Feb 1;41(3):1885-94. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2012 <\/strong><\/span><\/h2>\n<\/div>\n
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Smith BA, Jackman JE. Kinetic analysis of 3′-5′ nucleotide addition catalyzed by eukaryotic tRNA(His) guanylyltransferase.<\/strong><\/span> Biochemistry. 2012 Jan 10;51(1):453-65. PubMed<\/a><\/p>\n

Jackman JE, Gott JM, Gray MW. Doing it in reverse: 3′-to-5′ polymerization by the Thg1 superfamily<\/strong><\/span>. RNA. 2012 May;18(5):886-99. doi: 10.1261\/rna.032300.112. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2011 <\/strong><\/span><\/h2>\n<\/div>\n
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Rao BS, Maris EL, Jackman JE. tRNA 5′-end repair activities of tRNAHis guanylyltransferase (Thg1)-like proteins from Bacteria and Archaea.<\/strong> <\/span>Nucleic Acids Res. 2011 Mar;39(5):1833-42. PubMed<\/a><\/p>\n

Abad MG, Long Y, Willcox A, Gott JM, Gray MW, Jackman JE. A role for tRNAHis<\/sup> guanylyltransferase (Thg1)-like proteins from Dictyostelium discoideum<\/em> in mitochondrial 5\u2032-tRNA editing. <\/span><\/span><\/strong>RNA. 2011 Apr;17(4):613-23. PubMed<\/a><\/span><\/span><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2010 <\/strong><\/span><\/h2>\n<\/div>\n
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Hyde SJ, Eckenroth BE, Smith BA, Eberley WA, Heintz NH, Jackman JE, Doubli\u00e9 S. tRNA(His) guanylyltransferase (THG1), a unique 3′-5′ nucleotidyl transferase, shares unexpected structural homology with canonical 5′-3′ DNA polymerases.<\/strong><\/span> Proc  Natl Acad Sci U S A. 2010 Nov 23;107(47):20305-10. PubMed<\/a><\/p>\n

Jackman, J (2010) tRNA biogenesis,<\/strong><\/span> Encyclopedia of Life Sciences<\/em> DOI: 10.1002\/9780470015902.a0020894<\/em>.<\/p>\n

Abad MG, Rao BS and Jackman JE (2010) Template-dependent 3′-5′ nucleotide addition is a shared feature of tRNAHis<\/sup> guanylyltransferase enzymes from multiple domains of life,<\/strong><\/span> Proc Natl Acad Sci U S A<\/em> 107<\/em>, 674-679. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2008 <\/strong><\/span><\/h2>\n<\/div>\n
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Jackman JE and Phizicky EM (2008) Identification of critical residues for G-1<\/sub> addition and substrate recognition by tRNAHis<\/sup> guanylyltransferase,<\/strong><\/span> Biochemistry<\/em> 47<\/em>, 4817-4825. PubMed<\/a><\/p>\n

Jackman JE, Grayhack EJ, and Phizicky EM (2008) The use of Saccharomyces cerevisiae proteomic libraries to identify RNA-modifying proteins,<\/strong><\/span> Methods Mol Biol<\/em> 488<\/em>, 383-393. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2007 <\/strong><\/span><\/h2>\n<\/div>\n
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Wilkinson ML, Crary SM, Jackman JE, Grayhack EJ, Phizicky EM.(2007) “The 2′-O-methyltransferase responsible for modification of yeast tRNA at position 4.<\/strong><\/span>” RNA 13(3):404-13. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2006 <\/strong><\/span><\/h2>\n<\/div>\n
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Jackman JE, Phizicky EM. (2006) “tRNAHis guanylyltransferase catalyzes a 3′-5′ polymerization reaction that is distinct from G-1 addition.<\/strong><\/span>” Proc Natl Acad Sci U S A. 103(23):8640-5. PubMed<\/a><\/p>\n

Jackman JE, Phizicky EM. (2006) “tRNAHis guanylyltransferase adds G-1 to the 5′ end of tRNAHis by recognition of the anticodon, one of several features unexpectedly shared with tRNA synthetases.<\/strong><\/span>” RNA 12(6):1007-14. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2005 <\/strong><\/span><\/h2>\n<\/div>\n
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Steiger MA, Jackman JE, Phizicky EM. (2005) “Analysis of 2′-phosphotransferase (Tpt1p) from Saccharomyces cerevisiae: evidence for a conserved two-step reaction mechanism.<\/strong><\/span>” RNA 11(1):99-106. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2003 <\/strong><\/span><\/h2>\n<\/div>\n
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Gu W, Jackman JE, Lohan AJ, Gray MW, Phizicky EM. (2003) “tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5′ end of tRNAHis<\/strong><\/span>.” Genes Dev. 17(23):2889-901. PubMed<\/a><\/p>\n

Jackman JE, Montange RK, Malik HS, Phizicky EM. (2003) “Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9<\/strong><\/span>.” RNA 9(5):574-85. PubMed<\/a><\/p>\n

McClure CP, Rusche KM, Peariso K, Jackman JE, Fierke CA, Penner-Hahn JE. (2003) “EXAFS studies of the zinc sites of UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC).<\/strong><\/span>” J Inorg Biochem. 94(1-2):78-85. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2002 <\/strong><\/span><\/h2>\n<\/div>\n
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Pirrung MC, Tumey LN, Raetz CR, JJackman JE, Snehalatha K, McClerren AL, Fierke CA, Gantt SL, Rusche KM. (2002) “Inhibition of the antibacterial target UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC): isoxazoline zinc amidase inhibitors bearing diverse metal binding groups.<\/strong><\/span>” J Med Chem. 45(19):4359-70. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2001 <\/strong><\/span><\/h2>\n<\/div>\n
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Jackman JE, Raetz CR, Fierke CA. (2001) “Site-directed mutagenesis of the bacterial metalloamidase UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC). Identification of the zinc binding site.<\/strong><\/span>” Biochemistry 40(2):514-23. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n\n\n\n

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2000 <\/strong><\/span><\/h2>\n<\/div>\n
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Jackman JE, Fierke CA, Tumey LN, Pirrung M, Uchiyama T, Tahir SH, Hindsgaul O, Raetz CR. (2000) “Antibacterial agents that target lipid A biosynthesis in gram-negative bacteria. Inhibition of diverse UDP-3-O-(r-3-hydroxymyristoyl)-n-acetylglucosamine deacetylases by substrate analogs containing zinc binding motifs.<\/strong><\/span>” J Biol Chem. 275(15):11002-9. PubMed<\/a><\/p>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Search for Jackman Lab papers on PubMed   2024  Bowles IE, Jackman JE.  A tRNA-specific function for tRNA methyltransferase Trm10 is associated with a new tRNA quality control mechanism in Saccharomyces cerevisiae. RNA. 2024. PubMed 2023  Bowles IE, Jackman JE.  Diversity in Biological Function and Mechanism of the tRNA Methyltransferase Trm10. Accounts of Chemical Research. […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-15","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/pages\/15","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/comments?post=15"}],"version-history":[{"count":58,"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/pages\/15\/revisions"}],"predecessor-version":[{"id":1652,"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/pages\/15\/revisions\/1652"}],"wp:attachment":[{"href":"https:\/\/research.cbc.osu.edu\/jackman.14\/wp-json\/wp\/v2\/media?parent=15"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}