Publications

J.V. Coe and J.D. Erwin, “Effective mass of cavity-vibration polaritons formed in etalons with liquid carbon tetrachloride”,  J. Chem. Phys. (in press) (2022);             https://doi.org/10.1063/5.0078175

J.D. Erwin, Y. Wang, R.C. Bradley, J.V. Coe, “Changing Vibration Coupling Strengths of Liquid Acetonitrile with an Angle-tuned Etalon”, J. Phys. Chem. B, 125, 8472−8483, (2021).

J.V. Coe, “Introduction to Quantum Mechanics for Atoms, Molecules, and More Using             MATLAB® and WebMO®”, Copyright 2019, ISBN:  9781708523121

J.V. Coe, J.D. Erwin, and R.C. Bradley, “Reconstructing Fringes for Cavity-Vibration Experiments in FTIR Spectrometers”, Proceedings of SPIE, article #10917-1, (2019).

Erwin, M. Smotzer, and J.V. Coe, “Effect of Strongly Coupled Vibration−Cavity Polaritons on the Bulk Vibrational States within a Wavelength-Scale Cavity”, J. Phys. Chem. B, 123:6, 1302-1306 (2019), DOI: 10.1021/acs.jpcb.8b09913

J.V. Coe, Jr. “Data Fitting and Error Analysis with MATLAB®: Things You Get from Physical Chemistry Lab, but Need in All of Science and Engineering”, Oct. 26, 2018, ISBN-10: 172927420X, ISBN-13: 978-1729274200, 65 pages.

A. Ravi, A. Luthra, F.L. Teixeira, and J.V. Coe, “Predicting infrared spectra of atmospheric dust samples of mixed composition particles”, Conference Proceedings 2nd International Conference on Atmospheric Dust – DUST2016, ProScience 3 94-99 (2016). pdf

A. Luthra, A. Ravi, S. Li, S.V. Nystrom, Z. Thompson, P.J. Lioy, and J.V. Coe, “Dust Library of Plasmonically Enhanced Infrared Spectra of Individual Respirable Dust Particles: Lab Air, Home Air Filter, 11 September 2001 WTC Event and Calibrants”, Applied Spectroscopy, 70:9, 1546-1554 (2016). pdf

A. Ravi, A. Luthra, F.L. Teixeira, P.R. Berger, and J.V. Coe, “Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles”, Plasmonics 10:6, 1505-1512 (2015). pdf

J.V. Coe, S.V. Nystrom, Z. Chen, R. Li, D. Verreault, C.L. Hitchcock, E.W. Martin Jr., and H.C. Allen, “Extracting Infrared Spectra of Protein Secondary Structures using a Library of Protein Spectra and the Ramachandran Plot”, J. Phys. Chem B, 19:41 13079-13092 (2015). pdf

A. Luthra, A. Ravi, and J.V. Coe, “The Dust Library: Enhanced Infrared Spectra of Individual Respirable Dust Particles”, Proceedings of 45th International Conference on Environmental Systems, Bellevue WA, (2015), # 248, in press. pdf

J.V. Coe, Z. Chen, R. Li, S.V. Nystrom, R. Butke, B. Miller, C.L. Hitchcock, H.C. Allen, S.P. Povoski, E.W. Martin, Jr., “Molecular constituents of colorectal cancer metastatic to the liver by imaging infrared spectroscopy”, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XIII Book Series: Proceedings of SPIE, 9328, 89470B/1-89470B/7 (2015). pdf

J.V. Coe, Z. Chen, R. Li, R. Butke, B. Miller, C.L. Hitchcock, H.C. Allen, S.P. Povoski, E.W. Martin, Jr., “Imaging infrared spectroscopy for fixation-free liver tumor detection”, Proceedings of SPIE, 8947(Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XII), 89470B/1-89470B/6 (2014). pdf

K.R. Rodriguez, M.A. Malone, W.A. Nanney, C.J. A. Maddux, J.V. Coe, and
H. L. Martínez, “Generalizing thermodynamic properties of bulk single-walled carbon nanotubes”, AIP Advances 4, 127149 (2014); http://dx.doi.org/10.1063/1.4905263. pdf

J.V. Coe, D.B. Lioi, L. Shaffer, M.A. Malone, A. Luthra, A. Ravi, “Plasmonic spectra of  individual subwavelength particles under the infrared microscope: cells and airborne dust”, Proceedings of SPIE, 8957(Plasmonics in Biology and Medicine XI), 89570A/1-89570A/9 (2014). pdf

Z. Chen, R, Butke, B. Miller, C.L. Hitchcock, H.C. Allen, S.P. Povoski, E.W. Martin, and J.V. Coe, “Infrared Metrics for Fixation-Free Liver Tumor Detection”, J. Phys. Chem. B 117:41 12442-12450 (2013). pdf

D.B. Lioi, K.E. Cilwa, M. McCormack, M.A. Malone, and J.V. Coe, “Infrared Spectral Model for Subwavelength Particles of Mixed Composition based on the Spectra of Individual Particles with Calibration Data for Airborne Dust”, J. Phys. Chem. B, 117:44 11297-11307 (2013). pdf

A. Ravi, M.A. Malone, A. Luthra, D. Lioi, and J.V. Coe, “Spectral challenges of individual wavelength-scale particles: strong phonons and their distorted lineshapes”, Phys. Chem. Chem. Phys. 15:25 10307-10315 (2013). pdf

M.A. Malone, A. Luthra, D. Lioi, and J.V. Coe, “Developing Plasmonics Under the Infrared Microscope: From Ni Nanoparticle Arrays to Infrared Micromesh”, J. Phys. Chem. Lett. 3:13, 1774-1782, (2012). pdf

K. E. Cilwa, S. Teeters-Kennedy, K.A. Ramsey and J.V. Coe, “Infrared Plasmonic Transmission Resonances of Gold Film with Hexagonally Ordered Hole Arrays on ZnSe Substrate”, Plasmonics 8:2 349-355 (2013). pdf

M.A. Malone, K.E. Cilwa, A. Luthra, M. McCormack, D. Lioi, and J.V. Coe, “Plasmonics under the Infrared Microscope: Sensing and Spectra of Single Particles Using Metal Film Hole Arrays”, 2012 Symposium on Photonics and Optoelectronics (SOPO 2012), 6 pages, available at iEEE Explore, digital object identifier: 10.1109/SOPO.2012.6270997. pdf

M. A. Malone, M. McCormack, and J.V. Coe “Single Airborne Dust Particles using Plasmonic Metal Films with Hole Arrays”, J. Phys. Chem. Lett. 3, 720−724 (2012). pdf

J.M. Heer and J.V. Coe, “3D-FDTD Modeling of Angular Spread for the Extraordinary Transmission Spectra of Metal Films with Arrays of Subwavelength Holes”, Plasmonics, 7:1–5 (2012).pdf

K. E. Cilwa, M. McCormack, M. Lew, C. Robitaille, L. Corwin, M.A. Malone, and J.V. Coe, “Scatter-Free IR Absorption Spectra of Individual, 3-5 μm, Airborne, Dust Particles Using Plasmonic Metal Microarrays: A Library of 63 Spectra”, J. Phys. Chem. C 115, 16910–16919 (2011). pdf library of 63 spectra (Excel)

M. A. Malone, K. E. Cilwa, M. McCormack, and J.V. Coe “Modifying an Infrared Microscope to Characterize Propagating Surface Plasmon Polariton Mediated Resonances”, J. Phys. Chem. 115, 12250–12254 (2011). pdf

M. A. Malone, S. Prakash, J.M. Heer, L.D. Corwin, K. E. Cilwa, and J.V. Coe, “Modifying infrared scattering effects of single yeast cells with plasmonic metal mesh”, J. Chem. Phys. 133, 185101 (2010). pdf

J.  Heer, L. Corwin, K. Cilwa, M. Malone Jr., and J. V. Coe, “Infrared Sensitivity of Plasmonic Metal Films with Hole Arrays to Microspheres In and Out of the Holes”, J. Phys. Chem. C, 114, 520-525 (2010). pdf

K.E. Cilwa, K.R. Rodriguez, J.M. Heer, M.A. Malone, L.D. Corwin, and J.V. Coe, “Propagation lengths of surface plasmon polaritons on metal films with arrays of subwavelength holes by infrared imaging spectroscopy,” J. Chem. Phys. 131(6), 061101 (2009). pdf

J.V. Coe, S.M. Williams, and K.H. Bowen, “Photoelectron spectra of hydrated electron clusters vs cluster size:  Connecting to bulk”, Int. Rev. Phys. Chem., 27(1), 27-51 (2008).pdf

J.V. Coe, J.M. Heer, S. Teeters-Kennedy, H. Tian, and K.R. Rodriguez, “Extraordinary Transmission of Metal Films with Arrays of Subwavelength Holes”, Ann. Rev. Phys. Chem. 59 179-202 (2008).pdf

J. V. Coe, K.R. Rodriguez, S. Teeters-Kennedy, K. Cilwa, J.M. Heer, and H. Tian, and S.M. Williams, “Metal Films with Arrays of Tiny Holes:  Spectroscopy with Infrared Plasmonic Scaffolding”, J. Phys. Chem. C 111(47) 17459-17472 (2007), featured article. pdf

K.R. Rodriguez, H. Tian, J.M. Heer, and J.V. Coe, “Extraordinary Infrared Transmission Resonances of Metal Microarrays for Sensing Nanocoating Thickness”, J. Phys. Chem. C, 111 12106-12111 (2007). pdf

 K.R. Rodriguez, H. Tian, J.M. Heer, S. Teeters-Kennedy, and J.V. Coe, “Interaction of an infrared surface plasmon with an excited molecular vibration”, J. Chem. Phys. 126 151101, 5 pps (2007). pdf

S.M. Teeters-Kennedy, S.M. Williams, K.R. Rodriguez, K. Cilwa, D. Meleason, A. Sudnitsyn, F. Hrovat, and J.V. Coe, “Extraordinary Infrared Transmission of a Stack of Two Metal Micromeshes”, J. Phys. Chem. C, (2007), 111, 124-130. pdf

K.R. Rodriguez, S.M. Williams, M.A. Young, S.M. Teeters-Kennedy, J.M. Heer, and J.V. Coe, “Carbon Chains and the (5,5) Single-Walled Nanotube:  Structure and Energetics vs Length”, J. Chem. Phys., 125 194716, 15 pps, (2006). pdf

 S.M. Teeters-Kennedy, K.R. Rodriguez, T.M. Rogers, K.A. Zomcheck, S.M. Williams, A. Sudnitsyn, L. Carter, V. Cherezo, M. Caffrey, and J.V. Coe, “Controlling the Passage of Light through Microchannels by Nanocoatings of Phospholipids”, J. Phys. Chem. B,  110(43) 21719-21727 (2006). pdf

J.V. Coe, S.T. Arnold, J.G. Eaton, G.H. Lee, and K.H. Bowen, “Photoelectron spectra of hydrated electron clusters:  Fitting lineshapes and grouping isomers”, J. Chem. Phys., 125(1), 14315 1-11, (2006).pdf

J.V. Coe,S.M. Williams, K.R. Rodriguez, S. Teeters-Kennedy, A. Sudnitsyn, and F. Hrovat “Extraordinary Infrared Transmission of Metallic Arrays of Subwavelength Holes”, Analytical Chemistry, March 1, 78(5), 1385-1390 (2006), Featured Article (A-Page). pdf

S.M. Williams, and J.V. Coe, “Dispersion Study of the Infrared Transmission Resonances of Freestanding Ni Microarrays”, Plasmonics, 1(1), 87-93 (2006). pdf

B. C. Garrett, D. A. Dixon, D. M. Camaioni, D. M. Chipman, M. A. Johnson, C. D. Jonah, G. A. Kimmel, J. H. Miller, T. N. Rescigno, P. J. Rossky, S. S. Xantheas, S. D. Colson, A. H. Laufer, D. Ray, P. F. Barbara, D. M. Bartels, K. H. Becker, K. H. Bowen, S. E. Bradforth,I.Carmichael, J. V. Coe, L. R. Corrales, J. P. Cowin, M. Dupuis, K. B. Eisenthal, J. A. Franz, M. S. Gutowski, K. D. Jordan, B. D. Kay, J. A. LaVerne, S. V. Lymar, T. E. Madey, C. W. McCurdy, D. Meisel, S. Mukamel, A. R. Nilsson, T. M.  Orlando, N. G. Petrik, S. M. Pimblott, J. R. Rustad, G. K. Schenter, S. J. Singer, A., Tokmakoff, L.-W. Wang, C. Wittig, and T. S. Zwier, “The Role of Water on Electron-Initiated Processes and Radical Chemistry: Issues and Scientific Advances”, Chemical Reviews 105, 355-389 (2005).pdf

 K.R. Rodriguez, S. Shah, S.M. Williams, S. Teeters-Kennedy, and J.V. Coe, “Enhanced IR Absorption Spectra of Self-Assembled Alkanethiol Monolayers using the Extraordinary IR Transmission of Metallic Arrays of Subwavelength Apertures”, J. Chem. Phys. 121(18), 8671-8675 (2004). pdf

S.M. Williams, K.R. Rodriguez, S. Teeters-Kennedy, A.D. Stafford, S.R. Bishop,U.K. Lincoln, and J.V. Coe, “Using the extraordinary infrared transmission of metallic subwavelength arrays to study the catalyzed reaction of methanol to formaldehyde on copper oxide”, J. Phys. Chem. B, 108 11833-11837 (2004).pdf

S.M. Williams, K.R. Rodriguez, S.M. Teeters-Kennedy, S. Shah, T.M. Rogers, A.D. Stafford, and J.V. Coe, “Scaffolding for Nanotechnology:  Extraordinary IR Transmission of Metal Microarrays for Stacked Sensors and Surface Spectroscopy”, Nanotechnology, 15 S495-S503 (2004).pdf

S.M. Williams, A.D. Stafford, T.M. Rogers, Sarah R. Bishop, and J.V. Coe,    “Extraordinary Infrared Transmission of Cu-Coated Arrays with Subwavelength  Apertures:  Hole Size and the Transition from Surface Plasmon to Waveguide Transmission”, Appl. Phys. Lett. 85(9), 1472-1474 (2004).  pdf

S.M. Williams, A.D. Stafford, K.R. Rodriguez, T.M. Rogers, and J.V. Coe, “Accessing Surface Plasmons with Ni Microarrays for Enhanced IR Absorption by Monolayers”, J. Phys. Chem. B, 107 11871-11879 (2003).pdf